TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.4674 of Sphaeroforma arctica JP610                          53   1e-06

>supercont1.4674 of Sphaeroforma arctica JP610
          Length = 2338

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 37/51 (72%)
 Frame = +2

Query: 143  SRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETCLQRNGQR 193
            +R   +++DDNFYY+SMR E+YQLA   S+G+ Q+++ C  E  ++R+ +R
Sbjct: 1205 TRLRMILIDDNFYYRSMRKEIYQLADIMSIGYVQVWIVCDTEVAVRRDARR 1357


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,443,077
Number of Sequences: 15618
Number of extensions: 847481
Number of successful extensions: 3752
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 2529
length of query: 348
length of database: 40,529,447
effective HSP length: 110
effective length of query: 238
effective length of database: 38,811,467
effective search space: 9237129146
effective search space used: 9237129146
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)